Microscopy such as Scanning Tunneling Microscopy (STM), Atomic Force Microscopy (AFM) and Scanning Electron Microscopy (SEM) are essential tools in material imaging at micro- and nanoscale resolutions to extract physical knowledge and materials structure-property relationships. However, tuning microscopy controls (e.g. scanning speed, current setpoint, tip bias etc.) to obtain a high-quality of images is a non-trivial and time-consuming effort. On the other hand, with sub-standard images, the key features are not accurately discovered due to noise and artifacts, leading to erroneous analysis. Existing denoising models mostly build on generalizing the weak signals as noises while the strong signals are enhanced as key features, which is not always the case in microscopy images, thus can completely erase a significant amount of hidden physical information. To address these limitations, we propose a global denoising model (GDM) to smartly remove artifacts of microscopy images while preserving weaker but physically important features. The proposed model is developed based on 1) first designing a two-imaging input channel of non-pair and goal specific pre-processed images with user-defined trade-off information between two channels and 2) then integrating a loss function of pixel- and fast Fourier-transformed (FFT) based on training the U-net model. We compared the proposed GDM with the non-FFT denoising model over STM-generated images of Copper(Cu) and Silicon(Si) materials, AFM-generated Pantoea sp.YR343 bio-film images and SEM-generated plastic degradation images. We believe this proposed workflow can be extended to improve other microscopy image quality and will benefit the experimentalists with the proposed design flexibility to smartly tune via domain-experts preferences.

The availability of Synthetic Aperture Radar (SAR) satellite imagery has increased considerably in recent years, with datasets commercially available. However, the acquisition of high-resolution SAR images in airborne configurations, remains costly and limited. Thus, the lack of open source, well-labeled, or easily exploitable SAR text-image datasets is a barrier to the use of existing foundation models in remote sensing applications. In this context, synthetic image generation is a promising solution to augment this scarce data, enabling a broader range of applications. Leveraging over 15 years of ONERA's extensive archival airborn data from acquisition campaigns, we created a comprehensive training dataset of 110 thousands SAR images to exploit a 3.5 billion parameters pre-trained latent diffusion model \cite{Baqu2019SethiR}. In this work, we present a novel approach utilizing spatial conditioning techniques within a foundation model to transform satellite SAR imagery into airborne SAR representations. Additionally, we demonstrate that our pipeline is effective for bridging the realism of simulated images generated by ONERA's physics-based simulator EMPRISE \cite{empriseem_ai_images}. Our method explores a key application of AI in advancing SAR imaging technology. To the best of our knowledge, we are the first to introduce this approach in the literature.

In this paper, we address the Sim2Real gap in the field of vision-based tactile sensors for classifying object surfaces. We train a Diffusion Model to bridge this gap using a relatively small dataset of real-world images randomly collected from unlabeled everyday objects via the DIGIT sensor. Subsequently, we employ a simulator to generate images by uniformly sampling the surface of objects from the YCB Model Set. These simulated images are then translated into the real domain using the Diffusion Model and automatically labeled to train a classifier. During this training, we further align features of the two domains using an adversarial procedure. Our evaluation is conducted on a dataset of tactile images obtained from a set of ten 3D printed YCB objects. The results reveal a total accuracy of 81.9%, a significant improvement compared to the 34.7% achieved by the classifier trained solely on simulated images. This demonstrates the effectiveness of our approach. We further validate our approach using the classifier on a 6D object pose estimation task from tactile data.

Up to 150000 asteroids will be visible in the images of the ESA Euclid space telescope, and the instruments of Euclid offer multiband visual to near-infrared photometry and slitless spectra of these objects. Most asteroids will appear as streaks in the images. Due to the large number of images and asteroids, automated detection methods are needed. A non-machine-learning approach based on the StreakDet software was previously tested, but the results were not optimal for short and/or faint streaks. We set out to improve the capability to detect asteroid streaks in Euclid images by using deep learning. We built, trained, and tested a three-step machine-learning pipeline with simulated Euclid images. First, a convolutional neural network (CNN) detected streaks and their coordinates in full images, aiming to maximize the completeness (recall) of detections. Then, a recurrent neural network (RNN) merged snippets of long streaks detected in several parts by the CNN. Lastly, gradient-boosted trees (XGBoost) linked detected streaks between different Euclid exposures to reduce the number of false positives and improve the purity (precision) of the sample. The deep-learning pipeline surpasses the completeness and reaches a similar level of purity of a non-machine-learning pipeline based on the StreakDet software. Additionally, the deep-learning pipeline can detect asteroids 0.25-0.5 magnitudes fainter than StreakDet. The deep-learning pipeline could result in a 50% increase in the number of detected asteroids compared to the StreakDet software. There is still scope for further refinement, particularly in improving the accuracy of streak coordinates and enhancing the completeness of the final stage of the pipeline, which involves linking detections across multiple exposures.

The rise of automation and machine learning (ML) in electron microscopy has the potential to revolutionize materials research through autonomous data collection and processing. A significant challenge lies in developing ML models that rapidly generalize to large data sets under varying experimental conditions. We address this by employing a cycle generative adversarial network (CycleGAN) with a reciprocal space discriminator, which augments simulated data with realistic spatial frequency information. This allows the CycleGAN to generate images nearly indistinguishable from real data and provide labels for ML applications. We showcase our approach by training a fully convolutional network (FCN) to identify single atom defects in a 4.5 million atom data set, collected using automated acquisition in an aberration-corrected scanning transmission electron microscope (STEM). Our method produces adaptable FCNs that can adjust to dynamically changing experimental variables with minimal intervention, marking a crucial step towards fully autonomous harnessing of microscopy big data.

In recent years, laser ultrasonic visualization testing (LUVT) has attracted much attention because of its ability to efficiently perform non-contact ultrasonic non-destructive testing.Despite many success reports of deep learning based image analysis for widespread areas, attempts to apply deep learning to defect detection in LUVT images face the difficulty of preparing a large dataset of LUVT images that is too expensive to scale. To compensate for the scarcity of such training data, we propose a data augmentation method that generates artificial LUVT images by simulation and applies a style transfer to simulated LUVT images.The experimental results showed that the effectiveness of data augmentation based on the style-transformed simulated images improved the prediction performance of defects, rather than directly using the raw simulated images for data augmentation.

The exceptional resolution achieved by the EHT is made possible by an array of telescopes spanning the Earth and operating as a very long baseline interferometer (VLBI; Event Horizon Telescope Collaboration et al. 2019b, 2019c). Despite this global reach, the sparse interferometric coverage of the EHT array (especially during the 2017 observations that have been used for all of the publications to date) makes the already complex problem of interferometric image reconstruction particularly challenging. In such situations, special care is needed to assess the impact of imaging algorithms and sparse interferometric data on the final set of images that can be reconstructed from it. A cornerstone of the EHT data analysis strategy was the use of several independent analysis methods, each with different priorities, assumptions, and choices, to ensure that the EHT results were robust to these differences. The use of several general-purpose imaging algorithms, for example, was motivated by a desire to reconstruct an image that was consistent with the EHT data while remaining model-agnostic.

Photorealistic image generation from simulated label maps are necessitated in several contexts, such as for medical training in virtual reality. With conventional deep learning methods, this task requires images that are paired with semantic annotations, which typically are unavailable. We introduce a contrastive learning framework for generating photorealistic images from simulated label maps, by learning from unpaired sets of both. Due to potentially large scene differences between real images and label maps, existing unpaired image translation methods lead to artifacts of scene modification in synthesized images. We utilize simulated images as surrogate targets for a contrastive loss, while ensuring consistency by utilizing features from a reverse translation network. Our method enables bidirectional label-image translations, which is demonstrated in a variety of scenarios and datasets, including laparoscopy, ultrasound, and driving scenes. By comparing with state-of-the-art unpaired translation methods, our proposed method is shown to generate realistic and scene-accurate translations.

In ultrasound imaging the appearance of homogeneous regions of tissue is subject to speckle, which for certain applications can make the detection of tissue irregularities difficult. To cope with this, it is common practice to apply speckle reduction filters to the images. Most conventional filtering techniques are fairly hand-crafted and often need to be finely tuned to the present hardware, imaging scheme and application. Learning based techniques on the other hand suffer from the need for a target image for training (in case of fully supervised techniques) or require narrow, complex physics-based models of the speckle appearance that might not apply in all cases. With this work we propose a deep-learning based method for speckle removal without these limitations. To enable this, we make use of realistic ultrasound simulation techniques that allow for instantiation of several independent speckle realizations that represent the exact same tissue, thus allowing for the application of image reconstruction techniques that work with pairs of differently corrupted data. Compared to two other state-of-the-art approaches (non-local means and the Optimized Bayesian non-local means filter) our method performs favorably in qualitative comparisons and quantitative evaluation, despite being trained on simulations alone, and is several orders of magnitude faster.

Denoising is a fundamental challenge in scientific imaging. Deep convolutional neural networks (CNNs) provide the current state of the art in denoising natural images, where they produce impressive results. However, their potential has barely been explored in the context of scientific imaging. Denoising CNNs are typically trained on real natural images artificially corrupted with simulated noise. In contrast, in scientific applications, noiseless ground-truth images are usually not available. To address this issue, we propose a simulation-based denoising (SBD) framework, in which CNNs are trained on simulated images. We test the framework on data obtained from transmission electron microscopy (TEM), an imaging technique with widespread applications in material science, biology, and medicine. SBD outperforms existing techniques by a wide margin on a simulated benchmark dataset, as well as on real data. Apart from the denoised images, SBD generates likelihood maps to visualize the agreement between the structure of the denoised image and the observed data. Our results reveal shortcomings of state-of-the-art denoising architectures, such as their small field-of-view: substantially increasing the field-of-view of the CNNs allows them to exploit non-local periodic patterns in the data, which is crucial at high noise levels. In addition, we analyze the generalization capability of SBD, demonstrating that the trained networks are robust to variations of imaging parameters and of the underlying signal structure. Finally, we release the first publicly available benchmark dataset of TEM images, containing 18,000 examples.